Table 2: Characteristics of the SSR markers of the Chickpea Genotype Identification kit
Marker name |
Motif |
Forward primer sequence (5'-3') |
Reverse primer sequence (5'-3') |
Source |
T°a |
Map (linkage group location) |
CaSTMS2 |
(TAT)25 |
ATTTTACTTTACTACTTTTTTCCTTTC |
AATAAATGGAGTGTAAATTTCATGTA |
Huttel et al. 1999 |
59 |
LG4 |
CaSTMS15 |
(ATT)21 |
CTTGTGAATTCATATTTACTTATAGAT |
ATCCGTAATTTAAGGTAGGTTAAAATA |
Huttel et al. 1999 |
59 |
LG4 |
CaSTMS21 |
(CT)9 n(CTTT)2 (CT)4 |
CTACAGTCTTTTGTTCTTCTAGCTT |
ATATTTTTTAAGAGGCTTTTGGTAG |
Huttel et al. 1999 |
59 |
LG6 |
TA14 |
(TAA)22n(TAA)4T(A)3n(AAT)5n(A)3(GAT)4(TAA)5 |
TGACTTGCTATTTAGGGAACA |
TGGCTAAAGACAATTAAAGTT |
Winter et al. 1999 |
59 |
LG6 |
TA21 |
(TAA)51 |
GTACCTCGAAGATGTAGCCGATA |
TTTTCCATTTAGAGTAGGATCTTCTTG |
Winter et al. 1999 |
59 |
LG5 |
TA22 |
(ATT)40 |
TCTCCAACCCTTTAGATTGA |
TCGTGTTTACTGAATGTGGA |
Winter et al. 1999 |
59 |
LG4 |
TA27 |
(TAA)21 |
GATAAAATCATTATTGGGTGTCCTTT |
TTCAAATAATCTTTCATCAGTCAAATG |
Winter et al. 1999 |
59 |
LG7 |
TA28 |
(TAA)37n(TAA)30 |
TAATTGATCATACTCTCACTATCTGCC |
TGGGAATGAATATATTTTTGAAGTAAA |
Winter et al. 1999 |
59 |
LG5 |
TA46 |
(TAA)22 |
TTTATTGCAATAAAACTCATTTCTTATC |
TTCTTTTTGTGTGAAAAAAAAATATAGTGA |
Winter et al. 1999 |
56 |
LG2 |
TA64 |
(TAA)39 |
ATATATCGTAACTCATTAATCATCCGC |
AAATTGTTGTCATCAAATGGAAAATA |
Winter et al. 1999 |
59 |
LG1 |
TA71 |
(AAT)32 |
CGATTTAACACAAAACACAAA |
CCTATCCATTGTCATCTCGT |
Winter et al. 1999 |
59 |
LG3 |
TA72 |
(ATT)36 |
GAAAGATTTAAAAGATTTTCCACGTTA |
TTAGAAGCATATTGTTGGGATAAGAGT |
Winter et al. 1999 |
59 |
LG2 |
TA76s |
(AAT)7 (AAT)4 [ACT(AAT)11]2 n(AAT)3 n(AAT)2 (ATT)5 |
TCCTCTTCTTCGATATCATCA |
CCATTCTATCTTTGGTGCTT |
Winter et al. 1999 |
48 |
LG1 |
TA113 |
(TAA)26 |
TCTGCAAAAACTATTACGTTAATACCA |
TTGTGTGTAATGGATTGAGTATCTCTT |
Winter et al. 1999 |
56 |
LG 1 |
TA116 |
(TAA)5n(A)3(TAA)20 |
AATTCAATGACGAATTTTTATAAGGG |
AAAAAGAAAAGGGAAAAGTAGGTTTTA |
Winter et al. 1999 |
59 |
NA |
TA117 |
(ATT)52 |
GAAAATCCCAAATTTTTCTTCTTCT |
AACCTTATTTAAGAATATGAGAAACACA |
Winter et al. 1999 |
56 |
NA |
TA118 |
(TAA)45 |
ACAAGTCACATGTGTTCTCAATA |
GGAAAGGTTAAGAAATTTTACAATAC |
Unpublished (P. Winter, Germany) |
59 |
NA |
TA130 |
(TAA)19 |
TCTTTCTTTGCTTCCAATGT |
GTAAATCCCACGAGAAATCAA |
Winter et al. 1999 |
59 |
LG2 |
TA135 |
(TAA)17 |
TGGTTGGAAATTGATGTTTT |
GTGGTGTGAGCATAATTCAA |
Winter et al. 1999 |
56 |
LG1 |
TA142 |
(TTA)15 |
TGTTAACATTCCCTAATATCAATAACTT |
TTCCACAATGTTGTATGTTTTGTAAG |
Winter et al. 1999 |
48 |
NA |
TA200 |
(TTA)37 |
TTTCTCCTCTACTATTATGATCACCAG |
TTGAGAGGGTTAGAACTCATTATGTTT |
Winter et al. 1999 |
59 |
NA |
TA206 |
(TAA)25 |
GTCCCACTTCCACTTATAAAGGTT |
TAACGTATCTTGCAGATTTCAAATAAA |
Winter etal, 1999 |
59 |
NA |
TAA58 |
(AAT)41 |
CATTGCTTAAGAACCAAAATGG |
CAATTTTACATCGACGTGTGC |
Winter et al. 1999 |
56 |
LG5 |
TaaSH |
(TAA)40 |
GGTAGACGCAAAAGAGTGGG |
GCCACATTGACCAGGAATG |
Winter et al. 1999 |
59 |
LG3 |
TR2 |
(TTA)36 |
GGCTTAGAGTTCAAAGAGAGAA |
AACCAAGATTGGAAGTTGTG |
Winter et al. 1999 |
56 |
LG1 |
TR29 |
(TAA)8n(TAA)32 |
GCCCACTGAAAAATAAAAAG |
ATTTGAACCTCAAGTTCTCG |
Winter et al. 1999 |
59 |
LG3 |
TR31 |
(TAA)20 n(A)5 (TAA)9 |
CTTAATCGCACATTTACTCTAAAATCA |
ATCCATTAAAACACGGTTACCTATAAT |
Winter et al. 1999 |
59 |
LG1 |
TR43 |
(TAA)24 |
AGGACGAAACTATTCAAGGTAAGTAGA |
AATTGAGATGGTATTAAATGGATAACG |
Winter et al. 1999 |
59 |
LG6 |
TR7 |
(TTA)25 |
GCATTATTCACCATTTGGAT |
TGTGATAATTTTCTAAGTGTTTT |
Winter et al. 1999 |
59 |
LG4 |
TS84 |
(TTA)25 |
TTATAACAGCTTCCTTCTATTTGTTTTG |
AAGGCAAAAGTTTTTATCCCTTAATAG |
Winter et al. 1999 |
59 |
NA |
NCPGR4 |
(CT)16 |
TTACAGCTTGTGCTCAG |
AGTCAGATTCTTATCCGA |
Sethy et al. 2003 |
56 |
NA |
NCPGR6 |
(CA)12 |
GACCAAGATTAGTAGAACCT |
TATGTCTACACCTATGCATC |
Sethy et al. 2003 |
56 |
NA |
NCPGR7 |
(CA)14 |
GACCAAGATTAGTAGAACCT |
CTTGATAAGGATGAGTCATG |
Sethy et al. 2003 |
56 |
NA |
NCPGR12 |
(CT)35 |
CCTTGTTAGTGTGTATAGGT |
GTAATGACCAAGTGAACA |
Sethy et al. 2003 |
56 |
NA |
NCPGR19 |
(GA)19 |
TCCATTGTAGCTTAGCTTAG |
TCTTACTCTTAGCTTACCTCTT |
Sethy et al. 2003 |
56 |
NA |