Table 3: Alleles identified for each SSR marker of the kit on reference accessions.
SSR marker name |
Detection System |
Molecular size (bp) of alleles identified |
*Ref. 1 ("C1") |
**Ref. 2 ("C2") |
***Ref. 3 ("C3") |
|||||||
CaSTMS2 |
ABI |
232 |
241 |
244 |
256 |
259 |
262 |
271 |
|
262,232,244 |
256,241,256 |
244,271,259 |
CaSTMS15 |
ABI |
236 |
248 |
251 |
254 |
257 |
263 |
269 |
|
248,251,257 |
236,263,269 |
251,254,254 |
CaSTMS21 |
ABI |
168 |
172 |
|
|
|
|
|
|
168,168,172 |
172,168,172 |
168,172,172 |
TA14 |
ABI |
263 |
266 |
272 |
278 |
|
|
|
|
272,278,266 |
266,272,272 |
278,263,263 |
TA21 |
ABI |
328 |
331 |
337 |
346 |
349 |
352 |
355 |
361 |
352,331,361 |
337,355,328 |
349,346,346 |
TA22 |
ABI |
203 |
206 |
209 |
212 |
269 |
278 |
|
|
209,212,203 |
209,278,209 |
206,269,269 |
TA27 |
ABI |
224 |
227 |
233 |
236 |
239 |
242 |
|
|
227,239,233 |
239,242,236 |
236,227,224 |
TA28 |
ABI |
312 |
315 |
330 |
339 |
342 |
363 |
369 |
375 |
330,315,312 |
342,375,315 |
339,369,363 |
TA46 |
ABI |
127 |
142 |
145 |
148 |
151 |
154 |
|
|
142,145,142 |
145,148,151 |
127,154,154 |
TA64 |
ABI |
206 |
230 |
233 |
239 |
242 |
248 |
251 |
254 |
248,254,251 |
230,239,233 |
206,242,242 |
TA71 |
ABI |
184 |
187 |
196 |
202 |
205 |
214 |
223 |
|
196,205,214 |
196,223,202 |
202,184,187 |
TA72 |
ABI |
228 |
234 |
240 |
243 |
246 |
255 |
261 |
|
246,255,246 |
234,261,240 |
243,234,228 |
TA76s |
ABI |
203 |
212 |
218 |
|
|
|
|
|
203,212,218 |
218,218,212 |
212,218,218 |
TA113 |
ABI |
189 |
192 |
195 |
201 |
204 |
207 |
|
|
189,201,204 |
201,201,195 |
207,192,192 |
TA116 |
ABI |
179 |
182 |
194 |
212 |
|
|
|
|
179,179,182 |
194,179,179 |
179,212,212 |
TA117 |
ABI |
227 |
230 |
236 |
245 |
248 |
251 |
254 |
260 |
251,230,260 |
236,254,227 |
248,245,245 |
TA118 |
ABI |
188 |
191 |
200 |
215 |
218 |
230 |
|
|
215,191,200 |
188,191,230 |
200,230,218 |
TA130 |
ABI |
206 |
221 |
224 |
|
|
|
|
|
224,221,221 |
221,206,224 |
221,224,224 |
TA135 |
ABI |
175 |
190 |
193 |
199 |
|
|
|
|
199,193,193 |
193,199,193 |
175,190,190 |
TA142 |
ABI |
125 |
128 |
131 |
134 |
137 |
140 |
|
|
131,131,131 |
137,128,125 |
134,140,140 |
TA200 |
ABI |
271 |
274 |
286 |
292 |
295 |
298 |
298 |
307 |
271,292,271 |
295,286,298 |
298,307,274 |
TA206 |
ABI |
373 |
376 |
382 |
385 |
388 |
394 |
406 |
|
406,382,394 |
382,388,376 |
376,385,373 |
TAA58 |
ABI |
271 |
280 |
295 |
307 |
313 |
|
|
|
295,307,313 |
280,307,271 |
313,313,313 |
TaaSH |
ABI |
406 |
427 |
430 |
433 |
|
|
|
|
406,430,433 |
433,433,427 |
430,436,433 |
TR2 |
ABI |
214 |
223 |
229 |
241 |
244 |
250 |
|
|
229,241,223 |
229,244,223 |
250,214,214 |
TR29 |
ABI |
172 |
190 |
193 |
211 |
214 |
217 |
220 |
|
193,217,214 |
190,220,211 |
211,172,172 |
TR31 |
ABI |
198 |
201 |
210 |
213 |
216 |
|
|
|
198,216,198 |
210,216,213 |
201,201,201 |
TR43 |
ABI |
297 |
301 |
307 |
325 |
349 |
375 |
|
|
307,375,301 |
349,369,301 |
325,297,297 |
TR7 |
ABI |
197 |
200 |
203 |
206 |
209 |
212 |
217 |
218 |
217,212,209 |
218,206,203 |
203,200,197 |
TS84 |
ABI |
226 |
230 |
238 |
244 |
|
|
|
|
230,226,226 |
226,230,230 |
226,238,244 |
NCPGR12 |
ABI |
213 |
225 |
253 |
255 |
259 |
261 |
|
|
259,261,225 |
253,253,213 |
255,235,235 |
NCPGR19 |
ABI |
298 |
300 |
308 |
312 |
|
|
|
|
300,308,298 |
300,308,298 |
308,312,312 |
NCPGR4 |
ABI |
180 |
194 |
196 |
|
|
|
|
|
194,180,194 |
194,196,194 |
198,194,194 |
NCPGR6 |
ABI |
249 |
251 |
255 |
|
|
|
|
|
249,255,251 |
251,255,251 |
249,251,251 |
NCPGR7 |
ABI |
217 |
219 |
223 |
|
|
|
|
|
217,223,219 |
219,223,219 |
217,219,219 |